Scaffold Ga0209303_1002499

Overview

Basic Information

• Taxon OID: 3300027262
• Scaffold ID: Ga0209303_1002499
• Source Dataset Name: Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9461
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Sidmouth, United Kingdom
• Coordinates
  • Lat. (^o): 50.677
  • Long. (^o): -3.24
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023776	Metagenome	208	Y
F027093	Metagenome	195	Y
F031346	Metagenome	182	Y
F100271	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209303_10024991	F027093	N/A	VDPTRDVDEVPVRIQSRPKGIRPRYAPLPKGVGGLNVVAVLTGSTCQVACRVWLDAGRELALRFIVETGSCVSLVREALLPPEMKVALLDAATAQLFDVTWGLLPITETVNLTMRVGICSAPVTSGVVRGMSVPLLLGTDYTDVHVPNICGPEGIIQIRKRCMVPILRRGKTVSYARAGQRSKSGAAGEADIKVRLAH
Ga0209303_100249910	F023776	N/A	VIRSDEEPLPIEEVPQFEDSPNDAEAYALRRGGVFLCSSESSAPISDRMKQFARFLMEEGTRKLAGSCVIVNDELPISLLQDKYR
Ga0209303_100249913	F031346	N/A	MDSTWIPTIQHVHVTGDGFIHADASWIDSTTAAASKEVIPVAWLEFSLPSMTRLFALDPQLALRHFPRLNRVYGPYTYSWPKSAPATLIGSDPSVPVLPNGLLPPPVQHLDSVLRRLVTTTEAGTVAIPQWTNNSWYATAIRACFEYEALLSTDARDTNPTPWAMWACHFLHRYDDK
Ga0209303_10024997	F100271	N/A	MAVARGLAIVKFDEPFLVKLCRFRKDQVIVRKNATLGFAEPYQGPMLSAVLDNNNAKDETDTSSDDASRRGPLEDLDFSKAPEYLHKQIRDMLKTHSSM