Scaffold Ga0208933_1065450

Overview

Basic Information

• Taxon OID: 3300027261
• Scaffold ID: Ga0208933_1065450
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1563A-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 590
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2103
  • Long. (^o): -123.7517

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F038241	Metagenome / Metatranscriptome	166	Y
F096665	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208933_10654501	F038241	GGA	MMLGYSKTDLDEMINSVHDAKLFYIRNSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0208933_10654502	F000868	AGGTGG	MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQLYADFRFAEMSDNNYLKGRFNQFYDLNEGDQYYLEWNEEL
Ga0208933_10654503	F096665	N/A	DAINQMEYCEEEECGEICGNCNWLGEADLEAVAKCQTHAIYLETKVPEYRKVGTE