Scaffold Ga0208679_1000220

Overview

Basic Information

• Taxon OID: 3300027247
• Scaffold ID: Ga0208679_1000220
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20443
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020695	Metagenome	222	Y
F023847	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208679_100022014	F020695	AGGAG	MLKQFNSNSRKLNRIIPKINPNNLVSTDLTGSLLNIELPSSASYQSYTRSNPNPIKVVNNKTTISDFYQEILEHSARYIQRNVDVFDNNANTLTIYSASLDYGTEGASPNNFEVLVFGLHIPGNYTIKEVGNNVVITLNEQYIDYDNVTINDIYVMGKLKE
Ga0208679_10002202	F023847	N/A	MKIAQLKELVKQVVKEEHDYQQLFKHMLDKAGKDISSMNDDEKKKFFNAVDTAYKAKSEGRLRGYNENLPGNQEKLDTDKDGEIEASDLAALRAKNEGAKKKK