Scaffold Ga0208444_1040361

Overview

Basic Information

• Taxon OID: 3300027240
• Scaffold ID: Ga0208444_1040361
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 621
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2024
  • Long. (^o): -123.9409

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047649	Metagenome / Metatranscriptome	149	N
F072267	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208444_10403611	F072267	N/A	CFYFTEDYEYFDVIKDYLDIPEPCKTLEEISQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIDNFEYAKEHGQFPPKLTYSNLIATGSNITSSFVIKQGNKHEGYYTFGNCRSFKYYMPTKPNFIVRFFMKNLLGFFWVDEK
Ga0208444_10403612	F047649	GGTGG	MRYYETRTYEHQKDFDEKNRAQKYLTEYRDKYLHLRKEVRNLVREQNLTITPDFAKLIG