Scaffold Ga0208172_1000958

Overview

Basic Information

• Taxon OID: 3300027231
• Scaffold ID: Ga0208172_1000958
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8052
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.1869
  • Long. (^o): -123.8842

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103268	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208172_10009585	F103268	N/A	DYYSDNIGKEIIPIIPVQQQPELNQFLSGKKHIVYDKIGLSYEDNWMICCEKMLFTIYATDFSEINQIRNLMLDVFRRMDDSAKDLNASKSTPKIKFFNTMVVEISPTEPSQELQGFLSADVILEVKYARITDGAGRFN