Scaffold Ga0208555_1018641

Overview

Basic Information

• Taxon OID: 3300027213
• Scaffold ID: Ga0208555_1018641
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1097
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004955	Metagenome	417	Y
F086629	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208555_10186411	F086629	N/A	MTSRPYTGNTDGNHPKPRAGTKRFVDFSQYLFGVRSIGIYANRPMRSGPQLSVHATWRAIDLKGTKAQRKALVEFFFAHRDDLNIEEIHSYDGVGVPFPTDKWGAGYRC
Ga0208555_10186412	F004955	N/A	MTFNPSKALIALVGLVCITILLSVGKLETSEGVPILTMIIGYSIGNGMAALTNKEVQPIIRKKDSK