Scaffold Ga0208554_1049141

Overview

Basic Information

• Taxon OID: 3300027212
• Scaffold ID: Ga0208554_1049141
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 667
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039139	Metagenome	164	N
F093847	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208554_10491412	F039139	GGTGG	MSMFLNSFEFTSEDIVTILRAHETYVTIEQLAELTDVLDYDSIVRSALQYTDSDMQLKSALSQAEDLMIMDGLYITEPKRFHVDN
Ga0208554_10491413	F093847	GAG	LTINLRKTFARVTYFIEQSSKGKSRETILKELDLSEDEFQFLLNKMLEISMLNDNDAVISSIDILDNVFIGGVYVTSNNKTLLSF