Scaffold Ga0208554_1039923

Overview

Basic Information

• Taxon OID: 3300027212
• Scaffold ID: Ga0208554_1039923
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 749
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047650	Metagenome / Metatranscriptome	149	Y
F104501	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208554_10399233	F047650	AGAAGG	MIMEDLQVVYYCDSCNVARASYLVKLMEGELAFCGHHYFKNKGPLDEKSYEVIELNKVEEDAAVPQLTKAE
Ga0208554_10399234	F104501	AGGCGG	MGDRANFGFRDSKENIIFLYGHWAGHRMLENLANAVEQARPRWTDESYATRICVSQLVNEEWASETGWGLNVNEIGDNEHKVP