Scaffold Ga0208554_1001902

Overview

Basic Information

• Taxon OID: 3300027212
• Scaffold ID: Ga0208554_1001902
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3394
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F031497	Metagenome / Metatranscriptome	182	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208554_10019024	F031497	AGGCGG	MSKSPEIKVAESLVNLMDDHWFNPTMFGRYLAEQPLYTIDRVMEMVVSVISEQAKIYDVYLNRGTSSEGLLLANELNECIKAYQQDNNLNNLKLPSRSYKVKREEPLVRQSQFGWKEEEDPFS
Ga0208554_10019026	F000441	AGAAG	MSDAYLNDQLNTAQKLLWGGSETENIEAHNIIAQLIKDRIEQADLL
Ga0208554_10019029	F063705	N/A	MFLEYMKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERYE