Scaffold Ga0208307_1013689

Overview

Basic Information

• Taxon OID: 3300027211
• Scaffold ID: Ga0208307_1013689
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1343
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017288	Metagenome / Metatranscriptome	241	Y
F017815	Metagenome / Metatranscriptome	238	N
F061841	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208307_10136891	F017815	N/A	VNKIVDGMNNFVNNRLRSLPSRKEQAQLVISSYGETNRAAFVFKLLDGKSLGKDEYKKLLFQVLKN
Ga0208307_10136892	F017288	AGGA	MSDNNKTPYELRWEILKEMINLTRDEWHHKREVAQYNAEKSGKSLEYGGDIPLHDALQRAENVYASFICKK
Ga0208307_10136893	F061841	N/A	MSKNLLNETFKKHLGLLNKKLNEGLFEPDDDTIGAKLGFWLDQNSSGYTSSFEVDTVLDDLDIEKGTPAFNELVDAFKESGYELKGNEFVKIVKKVKKGSGVSDEVVKDTAKQYIKHFGKGSYSLGISAKDFVSLSQGGGDSDIRSNFPNWSDENFKQLLDILYTDGGVKRPVDETFQKHLGLLRKKLNEGNDNLVSMIERYIEIIETLKSISLSRDGGDPDLEDEKKQIKNQIISSKGQEYFNMVDEFVELKVRK