Scaffold Ga0208307_1006723

Overview

Basic Information

• Taxon OID: 3300027211
• Scaffold ID: Ga0208307_1006723
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1943
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010612	Metagenome	301	Y
F038155	Metagenome	166	Y
F054561	Metagenome	139	Y
F056557	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208307_10067231	F054561	AGGAG	MNNEIIVQNQLTLMNECFHCQQLNELCSDCLEAKEARDAVIAYQMAEYGAITESLPELSVIQDEPSAHDWISSEVIVREEKPTLSNWDRTQGESIYTMRTEFFEQSSWLIDRLFDLDESMEVTKHECICSVCHYTINKHAVCPNCN
Ga0208307_10067233	F038155	GGA	MSRIGDSMASNDRKNGKAYKKKPKVQKKTGKTIGGYSPSKLAIRAKKRGM
Ga0208307_10067234	F056557	GAGG	MYLDTGTMIGIIIALAASMLTIGYSVYIIKTQNEIIQRMSDARATRRKMER
Ga0208307_10067236	F010612	AGGA	MLDEDTPQWEHTVWIMAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRV