Scaffold Ga0208307_1000168

Overview

Basic Information

• Taxon OID: 3300027211
• Scaffold ID: Ga0208307_1000168
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18344
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F008080	Metagenome / Metatranscriptome	339	Y
F018713	Metagenome	233	N
F028094	Metagenome / Metatranscriptome	192	N
F038674	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208307_10001681	F018713	N/A	MTPDPNLWAEIPQEVKDAALLLGNYFKKQGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVNEGSDMETIICGLENSKKQFLNEGGDGIDYT
Ga0208307_100016811	F038674	N/A	MDRKGFFKTLFGGFVAASAAPSLIKAEETPQPPKDLSLSREVLRIDEHGNLGIGGSSNIGLGTSTPRNKLHVEGIVFHVNDRMLEMAGDENGDFKIHWLDTKENEFASSVIIKKPKDDLWKTNSIAIY
Ga0208307_100016812	F008080	GGA	MLKIQIWMRGTMEYSQDTIPGPTPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGRSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED
Ga0208307_100016819	F001732	N/A	MKRFLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDATVVEIEKNDKGKRIQTSTLAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQILQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVNPIAGAAFSIFNMLGSSVISIIKTLTPKAFEMSNFATKENVEQFKSPLVKMVDVIQELKEKQKDSPDKSYPLSEILKRFDKEMDSHEKDLIEEILREQKWIK
Ga0208307_100016826	F028094	AGGAG	MSKQLQFDFRSPEEVARQRKIAEENEKVLNDMFSNDDYVYNKYVDFLLDLIPFRWGWRAKNWPRAIKWWAKCKYQKIRYGVSDDDVYSLGYNIALFALPRLKYFKKKGKTGIPCCFLPDDFHLLEGEEQTTAEEKGVKEMNDALDEMIFAFEYIIDGDKFCELPESLSFKGKDFDFNSEKTIEEKESWKQYMEKANELNDRKNNGLALFAKYYDTLWI