Scaffold Ga0208307_1000106

Overview

Basic Information

• Taxon OID: 3300027211
• Scaffold ID: Ga0208307_1000106
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24648
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (46.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007265	Metagenome / Metatranscriptome	354	Y
F012341	Metagenome / Metatranscriptome	281	Y
F049618	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208307_100010642	F012341	N/A	MNITMKQFFDMVAKTIAEPYSQIVDHDIQHKRRAIRVFLYLDEFMMENVPEYCGDTALGEIDFGSYAAGVLDEIEGK
Ga0208307_100010649	F007265	N/A	MTFQPYTIVPGTQILHSLTDVYELEAEGMTHRVELQADNGGVYIKSSEKRLEEGSKNITEDMSIGNKELSIVVAKRILELYGVN
Ga0208307_100010666	F049618	N/A	MRIEITYTPHPTKGYTATIWDGPDGIDEDSFVCCSLGECFEQIVMWRTLNAQKYYGGTEVENDNK