Scaffold Ga0208307

Basic Information
Taxon OID	3300027211 Open in IMG/M
Scaffold ID	Ga0208307_1000014 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027211 Open in IMG/M

Scaffold ID

Ga0208307_1000014 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64560
Total Scaffold Genes	93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (26.88%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

64560

Total Scaffold Genes

93 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (26.88%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F057138	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208307_100001419	F057138	AGG	MKRILTLLSLIVSLFATKASAENLKASTEAGYTTHYMVNGLARTDAQAFAGVNLGATYHTIDTYLGGTIIPTSNGLDESHWMAGLGRGFKLIEGLTLRADAQAFRHQTAIPNAPNSTEVAAIVALENVVVTPYLKGSYDLNLEQSGYIVGLKRPTDAFGWFTITPVLEYGKFSDYETVSAKVGVSRVFFNHLEPFAEVGYYDNNFSVKNYNFAVKELNGTVMAMGGIRWNF
Ga0208307_100001429	F003904	AGG	VKTLILNIKKYLLVVLLPTAIFVIFAISSLKDIEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTTTSDKKFLDQFNIHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKKKIYDNINSFRALINDSSEKIIKDEIKLLNIYLYCLAGIVLALVYLIKHDNIVTVKKKPIKKKKK
Ga0208307_100001431	F001732	N/A	MKKLLFLPFVLLILTGCFSTIKPSKQIDDNQKIIAKEEKKVDNTLVDIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVIKMLTPKAFEMSNFATKEKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILREQKWIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208307_1000014

Overview

Ecosystem & Geography

Associated Families

Sequences