Scaffold Ga0208802_1000001

Overview

Basic Information

• Taxon OID: 3300027210
• Scaffold ID: Ga0208802_1000001
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81321
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (38.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004130	Metagenome / Metatranscriptome	451	Y
F044462	Metagenome / Metatranscriptome	154	Y
F067649	Metagenome	125	Y
F073110	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208802_1000001116	F004130	N/A	MHSAAGFLDSFVQDELDCRCLTEEDFGAPLDNEENDVPLYDMYNRGLTLCEQGLERNPLNLEGARLGTTGYIPSMEQGMSMGASPRPKTLVLELQGPGESEKLLSAKRRGLLR
Ga0208802_1000001125	F073110	N/A	VLTLRYSVKTEHSQVADFGDVVETKYVLSAEQLNASAFGNSTVYYSGSPIVYAPGDVVNLPYTSGELSTMEAVGLAWAAYASGIEPE
Ga0208802_1000001129	F044462	N/A	MILCPKFVKRTLTYLATALALQTVFIPGLKASSNWVGES
Ga0208802_100000195	F067649	GGA	MGEWINTLQSRMTNAMDGDCFLLPTYMHLHAFTILKDGMFAERDFKVELQNTKEAQ