Basic Information | |
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Taxon OID | 3300027205 Open in IMG/M |
Scaffold ID | Ga0208926_1002171 Open in IMG/M |
Source Dataset Name | Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2855 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
Source Dataset Sampling Location | ||||||||
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Location Name | Columbia River Estuary, USA | |||||||
Coordinates | Lat. (o) | 46.2327 | Long. (o) | -123.9168 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016125 | Metagenome | 249 | N |
F100667 | Metagenome | 102 | N |
F102807 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208926_10021712 | F100667 | AGG | MISIFSDTKKLEFALARLADAAKVDTGLVIKQEGAYIAKVMMQIIPPTGDKTKNGKTVPTVTGGTIKLKKASGLSINAKEQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGQNETMGVSLGNEGGKKIRIYRKFWLENASIPQMQAFHHANRNKRGRRKQVTRSAIGRFKVQDQMWISNESADAYLAYVQKSVGLAKAGFAAAAMLGGVRVPSWIRKHMAKAGNAQGHFGANPFFIARTTGNKIPNLQRVVDGALKIRYKITISKVRAVLANRAVNLGFTRVGGAMPIKSDA |
Ga0208926_10021713 | F016125 | AGG | MAAVRDFDPTQINSDFSAILEQAGVAFTYQGVSVTGIWAAASNAFADFEDQRREDSKFTVFLLTSSVSATPQVTQTLSRSSITYFIERVTLDAEGAGCEISVAKVI |
Ga0208926_10021715 | F102807 | N/A | VHENLLLLPNDLHNEWPVPVWRHQPVAIKQSNRKRNLAILGRSIAESATQYFYVHQEHYCAGNKTAAEQFGRIALSFPNLDDSFRYEVQLNLARLVASRREALQFAMGAHGVFPWCREAIASVIMLAFERNDGRRASFWAERMMSLPEPKEKDRPWTHEVKWYGWAGLDLAARSYRLADNPRKADGLQWAFHKHENPAIRLTQKTLGDSTRSVSFREAWLGTAAQPDTVEHVFLVRPDDKETMAMAKQFIHDVEHPRAVERAMISVHIEDGMVPPHDWDKLVLASGVTLIDAENIKEILVTKKP |
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