Scaffold Ga0208926_1002116

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1002116
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2890
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_10021161	F009004	N/A	LHIIINETIKTMKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLATFLDDEQLQEVENLFNQFKK
Ga0208926_10021162	F034772	N/A	MKNLIDYFTPTTEEHKSFLRHFLSTLTVFIVLGGMFYCLMYFKAL
Ga0208926_10021163	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEFAFIELDVEVSEKWLTETDDNLQPHVLGVRILEDLRLEIQEAINSDLVHYNFWEWKASNDESNYNFYHEL
Ga0208926_10021164	F006463	N/A	MNTETIYEQMDWWKRQWRGSFDLHLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTHHVKNLIQKNDDIIIEIKQIEK