Scaffold Ga0208926_1001014

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1001014
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4362
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F032955	Metagenome	178	Y
F034109	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100101411	F009140	GGAG	MRLNLTHRTLLKRLSSGPRTMLEMTHSHTDNNSVSFHYQRYLPELERFGYVINHQEKWHLTEYGRMEMNRAVSGAAMRIENGSTTEKYDGKELRRNISRRGCYDFLKYPSRFGDNLFYHKGEQA
Ga0208926_10010145	F034109	GAG	MANKINPLRTQTDFKINLSPEQRAILELIGGGNMTQGLKVAIDQAGHFYNCGLDPEMNLNYVGLVTTLPSQDDD
Ga0208926_10010147	F032955	AGGA	MNKDEAHHLLNKRKQGFAVPLYLVNSALVVSGDLGMACSPCKTTWVESTSMAQGEGVGVMPDSLMAWNKNRFDEPHESPI