Scaffold Ga0208926_1000140

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1000140
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14290
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y
F050365	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_10001401	F050365	N/A	TKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMTAIQQQPAPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLTQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS
Ga0208926_100014013	F017997	N/A	VNFIEQIVTALLKWLTSFVQKPPTVEDAKRDPDLKKKLLDRIAESDR
Ga0208926_100014015	F007260	GGA	VLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0208926_100014016	F013879	N/A	MTPTVTVDTSRFDEAWKEYLPKTKRSLADAVNARTFYLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRYDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVAMHKGSSANTQKARSGINPSSQVRMNIGLADNQVGTVEGIYAKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0208926_100014017	F010835	AGGA	MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI
Ga0208926_100014018	F023575	N/A	MAQSKGLALVYGSKGTIQLFNQTGVSPGTALSGAISTIESYDVTHEADVEQIKNSAGDVIAQIAANERISLSVTFIPSSATSAAIALTGASLPNVNGYAAIAGADATTYGGVSINGNYVYSGGGSVKFTSSGKAMVTVNLTKYPSMAGDATVYTL