Scaffold Ga0208926_1000110

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1000110
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15374
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.26%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F006547	Metagenome / Metatranscriptome	370	Y
F008491	Metagenome / Metatranscriptome	332	Y
F011762	Metagenome / Metatranscriptome	287	N
F017485	Metagenome	240	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F074879	Metagenome	119	Y
F077291	Metagenome / Metatranscriptome	117	N
F103233	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100011012	F006547	AGGA	MKWILILLLPFSISAQTYDTTCQMIYYQKSLIKKGKVELYGYTSYDLWWADESGMGITITIPNKRKKKKHKH
Ga0208926_100011021	F019136	N/A	MSLTITNYKKLESWSHNYKEFMIGEVTENQNEYCFRVGYNGIPYTIKIFRQGTITKEYEVVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVRFKPKAQTQTNNNINYFPS
Ga0208926_100011022	F017826	N/A	MERLKRIWNVVCVPTAFFLGALNMWIGETAVGCLFILFATNETINNKTI
Ga0208926_100011026	F074879	N/A	MNVSINDIKEIETQLSITLTDLQRDKILNEYNTIIGDRAESWDELIELLIVKQATIQILKDKNK
Ga0208926_100011027	F017485	N/A	MNNNELKTKDIVEGITFILMCIAIIGMVCVLYEVNELKGLSKGASNFRSIANQK
Ga0208926_100011028	F003691	N/A	MNSRMTNEFTETAFNTSRNERPIYRNFAASKMSQSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKEATTIKQIISQYPIKLGKVEKRFIAECKRELKQFGLTKKAIDIVLG
Ga0208926_100011030	F077291	N/A	MYNENEITLTMTKKQLKSVVSLMGIALETDCKPMNDMSNKKLENLSILYQVLKDMSKQAK
Ga0208926_100011034	F103233	N/A	MSKGQTDNELYEALIELGYDFGEIDTDDFDEDGFAETAVNLGYRWNETKKEWFNK
Ga0208926_100011035	F011762	N/A	MSKSKVKEIKLGKRGYKAIVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYVGDIEVEMKMDKLENSLIKNVLSKKDKKEVLASKELSDMVPALEVLVDANFRDMNARRPEDTDK
Ga0208926_100011037	F008491	AGGA	MELEQLIIKGNQKNNMAKKISTKVNYQVTELVNNLNEAATTQSEQKRDFFTTKALYNAKRLSSILSTAKVGAMSLILAVGMVACSAPASTETKTDSTAVVVADTTATQVVDTAAVVK