Scaffold Ga0208926

Basic Information
Taxon OID	3300027205 Open in IMG/M
Scaffold ID	Ga0208926_1000036 Open in IMG/M
Source Dataset Name	Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027205 Open in IMG/M

Scaffold ID

Ga0208926_1000036 Open in IMG/M

Source Dataset Name

Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29633
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (11.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

29633

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (11.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.2327	Long. (^o)	-123.9168	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.2327

Long. (^o)

-123.9168

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005814	Metagenome	389	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009958	Metagenome / Metatranscriptome	310	Y
F014573	Metagenome / Metatranscriptome	262	N
F019965	Metagenome	226	N
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100003610	F006463	N/A	MTSGTIYDQLDWWQRQWRGSFDLGLYLEICRIKKNEQIKFKTMKRFKATFKTWAYVGAPVKLETRIVKAYDFQHVKNLIQKNDDIIIEIKQIEQ
Ga0208926_100003616	F005814	N/A	MELELLSSRINLNHTCLKLQVSIDEIKAKNPHRNDLITSMEQTLHEVKKAIFIYQTLEKEFRATRQINFDLQHLNLELKQEVKDLKKIIEFNNAEL
Ga0208926_100003624	F014573	N/A	MSHNTKCWIQTMIYLFDMHIQDEQLRKEVQKLLVFKKRNNIVKEIQSKGVTFHFFQLTNFLEGRDVSLSTLKKIDYYVNK
Ga0208926_100003630	F019965	GGA	MNNLQVMMEAVQIYIYQKKGVKVRIYLRDIRDINLLKQAYDYIQQNQHNKNTNN
Ga0208926_100003648	F007860	N/A	MKSNYLAGLYFIAGFLTSFSLICQGTELYINLAGITLFFYLTFSLTEALEDLGL
Ga0208926_10000366	F034772	N/A	MKNLINYFTPATEEHKSFLRHFLGTLTAFILLGGMFYCLMYLKTI
Ga0208926_10000369	F009958	N/A	MENRNLGVWNRGWELLYEFAGWQFSIAGTWEFNDWDEVSEYAFIELDVEVSEKWIIETDDHLQPHVLGVRLLEDLRLEMQEIINSDLANYNFWEWKTSNDDSNYNFYHEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208926_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences