Scaffold Ga0208926_1000035

Overview

Basic Information

• Taxon OID: 3300027205
• Scaffold ID: Ga0208926_1000035
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449B-3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29741
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003327	Metagenome / Metatranscriptome	494	Y
F004234	Metagenome / Metatranscriptome	447	Y
F004451	Metagenome / Metatranscriptome	437	N
F034842	Metagenome	173	Y
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208926_100003520	F004234	N/A	MNFIDLYKNGNQYISNWKTDYDSDVYIAGTIEPFTYNASETDDEYMSLFILSDANLKLLKSKI
Ga0208926_100003523	F003327	N/A	MTEFTQLAIEVQDAIANGDYTHQKYLRFREWYFQSYEGSKRNAARDFRMFDLMYGLDVPIKNDTNEDI
Ga0208926_10000353	F034842	N/A	MISYQSIVDKIVTFYDNHLQVKKVGSDFKEQMVNFATKDEKYPLVYVVPTGVTPYQNVSIFNLEIYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPIFIPLNNDLLDYAAGWQMNLSVVIPSWTNCPIPKKIYTAYSQAIDPETFNSNSIIFFCNGVQWDVQTGLYSGNMFDFVAMCNANAQDSDFTQYGTYFDNGDNRVRLEMPYHVYNTFCPNGEVTMQIEQI
Ga0208926_100003539	F004451	AGGA	MRPILDNYISAHYKEIRKYTNYFLVRMKSTISADAVINNSFLYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPIVMDDDTDLYDKIRDDMQYQNNMAVIETYRGRITDRIKLIVFQCYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKTDLKNLRDEN
Ga0208926_100003546	F046370	N/A	MATTIIAQPQVLMPAYNPIKYIIDNTNKNEPGFRYIFTIYPAAGSHIPANVVAQYRVLPVFSTGYGEQDISRLMQSLVTWNFAPGQVNESWYLYDIDLGYEFIDNIDYTSALTIDGLNTNIAYTAHGFQVGDQVVIVQADGGVANPALEGLHTVIYAAANDFTVNVLWTTIGDPDINGNVSYADQRKTQVLDDELIEDQEVFNGAYSLGIYAQGSFPSAAYLGTLDPSYALTSLTNPNDSFAVAASITDNIFYLMCRVYSGVEYILQYYDSQGNAIGQDSPYNPTDGLYNFPVNTATHSITEDFYITIKANDVAGTEFEYYFSYDNRCAINEDILYYLDRMGSWQSFNFQLKTYEKGQISREMYNQHVDGQVTDGQWVYSPDAMGSKTYNINVSNTLDLNTNWMDQYNANRFQELLTSPQVFYYNGTDTRACTIEATSFENFRQRNKNLIKQSVTIKLALNTPING