Scaffold Ga0208163_1028002

Overview

Basic Information

• Taxon OID: 3300027198
• Scaffold ID: Ga0208163_1028002
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 938
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Yoonia → Yoonia sediminilitoris (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091608	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208163_10280021	F091608	AGGGGG	MKLSRKKRTPPLDLGKLKEVGSENRSSGKLTALAPYFLLLEEMKDKRSLNTPFVSLEALARITTARIEGYEEDDVLGSCPDTWGRETIRVPLPLLIALTDAWNSYRSADVGISLGESFGVEGKGQGKSKMKGRLEQRLKEHRIMNAVELAYLASGNTAEEVDAISLEVAIEQVAEVEGLSADTVQKYHKKHSKYLRGELKSRGLLKG