NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208438_1009956

Scaffold Ga0208438_1009956


Overview

Basic Information
Taxon OID3300027196 Open in IMG/M
Scaffold IDGa0208438_1009956 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1717
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.2Long. (o)-123.94Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043397Metagenome156N
F053301Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0208438_10099561F043397N/AYSTIVKADNEKDAIQKALDELSSEYVVKTLNSDEITVEEIPTFPSFDEWEEKYTALNNPHAREGEQGLGEIMFDTDGDEYQTVRGFDSSKIWTVRSTEYGLMLTAGFGVVDRFGYILSEQSFTEEDKDKAFIID
Ga0208438_10099564F053301GGAGGMTVREVISWLESIAEKTGDQTECIVEIEEQNYNTEANIHTVCINGYEDGSKKV

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