Scaffold Ga0208800_1000333

Overview

Basic Information

• Taxon OID: 3300027193
• Scaffold ID: Ga0208800_1000333
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6720
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004476	Metagenome / Metatranscriptome	436	Y
F059958	Metagenome	133	N
F076087	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208800_100033310	F076087	N/A	MQWRKVMYSDAEMEDVLFPHMMTEEQLDEQFDIEPDCEDPWSEAWMDANALESAGMGEDDGCSDIDW
Ga0208800_10003333	F004476	AGAAG	MLFSKHGFKSVDTAESFIKEAMELGNKDVVLSVVHENGVIDIVFSPTMDAIEAEVYHFLNDGTELKYSMPIKSLTSNNISTLYLTSQIYAYLSEAFKVADMFRSTTRQSTDYAS
Ga0208800_10003336	F059958	N/A	MDAVVKLMEFNKLYNTIVTTSVNEKNNLTQAEWALEDAKFEILRTVDVKELGSNSEQREAKLAGMLAEQVKAVRSITLRYELIKAEEQKCRANLEFAKHLVRASESLMEA