Scaffold Ga0208963

Basic Information
Taxon OID	3300027170 Open in IMG/M
Scaffold ID	Ga0208963_1000156 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027170 Open in IMG/M

Scaffold ID

Ga0208963_1000156 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_35 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23420
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (5.13%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23420

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (5.13%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	Monterey Bay, California, USA
Coordinates	Lat. (^o)	36.25	Long. (^o)	-122.2099	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Monterey Bay, California, USA

Coordinates

Lat. (^o)

36.25

Long. (^o)

-122.2099

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F009300	Metagenome	320	Y
F016596	Metagenome / Metatranscriptome	246	Y
F018080	Metagenome	237	Y
F024889	Metagenome	204	Y
F025613	Metagenome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208963_100015615	F025613	N/A	MNNYKITNKKSKRNYFLNEEELTNFFKKNKVQNYNIINLTEQKRIKRNKILDNIALVCFFAATVLITILIIENNY
Ga0208963_100015619	F008782	N/A	MKKPIFRVFVSYEIKNKKVVTRKAITGILDTFVLTSNIKEIESDQELIDRICYINKKNLHKVDVIITSIDIENQYGETTDRFEDEY
Ga0208963_100015621	F024889	N/A	MMNSATIGALMIVGVVILYIFALCYVEDKIARQENEKLKKNIDKLNDKA
Ga0208963_100015626	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNKGIRYKAAPLLEQRPVVEADLIMEGIGELNYIDVKGVKSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN
Ga0208963_100015629	F016596	N/A	MTNKYTLVQIRESRNEFEALLRIYGVSNLKLCKILGVNYATSRKFIENPPSLRFIHAKTLADFIGLKTQDIVDTIVYDLN
Ga0208963_100015630	F018080	N/A	MECLDIEIFNHFLKTYTYIIWNKKHLLGEIVEDDMMKMLDKQQLIDFYHVGKTKFKVEKSKIEKYIKRDDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208963_1000156

Overview

Ecosystem & Geography

Associated Families

Sequences