NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208608_100395

Scaffold Ga0208608_100395


Overview

Basic Information
Taxon OID3300027165 Open in IMG/M
Scaffold IDGa0208608_100395 Open in IMG/M
Source Dataset NameForest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1722
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Source Dataset Sampling Location
Location NameHarvard Forest LTER, Petersham, MA, USA
CoordinatesLat. (o)42.550409Long. (o)-72.180244Alt. (m)Depth (m)0 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062944Metagenome / Metatranscriptome130Y
F089221Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0208608_1003952F062944GGCGGMPLSRRFTPEHPPGESCSFGIDFSFIVPVGVSLASGSLAILTNTAAPADASADWTIGPVTVRDRALYAMLSGGVAGTDYQLKFTAVDTAGNTWPRTALVLCADTS
Ga0208608_1003953F089221N/AMFLRHPSDRPSVVVDPAAFGVGFPPGQVVGRPGPLGRERVMSALPLDPGPALLSPPTVVRDPGSAYLADPDGNLIGEAAVWVGRMLTARWTEDTRRF

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