Scaffold Ga0208020_1018129

Overview

Basic Information

• Taxon OID: 3300027159
• Scaffold ID: Ga0208020_1018129
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009293	Metagenome / Metatranscriptome	320	Y
F031660	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208020_10181291	F009293	N/A	GWPVVIKNLTIPHLDYDYYDDLPDWTIPDNKWIMPWYNSHIKNRSRLELERGWTDKEIDLFHKKHKQSNKGWNELFDMLFPHYKTNERMLSHRYNTLVENKLHLDELDEQHTGKEQQIRMFVQLDKKRPRVLSFGPDLEKLYYDYKDEFNLGELDKNNIHTFITEMRNRCVWNEQKWDQFHHPLHYITFNPGDIWFFNAQWITHQIVFGTKLQCFEADILNESLLKPDLCMVERIKNL
Ga0208020_10181292	F031660	N/A	HAEHIELSFYTNITNMQDKWLDQLAKFEKVIVNCSLEGMEDMNDYLRPPSKWASVWKNFDKLVKFSDTKEGKRIKVRVTTVNQITNALHTATFWKFMHDYQMTSNRGIGMSTNQLVEPAYYSMAHAPEWLKEEQREQILEFLKSIGNSPHFEQYEEPLMELVNFSLDPEHKYDADIMRQYVKITENYDRFRGHDIIQVSPEFERIKRDL