Scaffold Ga0208020_1002287

Overview

Basic Information

• Taxon OID: 3300027159
• Scaffold ID: Ga0208020_1002287
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3696
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F088530	Metagenome	109	N
F101177	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208020_100228710	F022391	GGAG	MTQGDYVKVSSTTEVEAKLKHLEARIRDWNYQSPLTIKLMPFTDPTSLSQDALFNIWCREIADQMKAKTPSADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKAKMAQFMHSVLVFADEKLRVRLSVPRNSEYVKVRENEQAKESKQKAKEEANHT
Ga0208020_10022875	F101177	AGGAG	MYYRDEDPNRTGSPDDCFNSFMSDITGGRSDNIEDYEKRPIMPEPSQYALEQEAIRKAEHQKDLDYFMRRQINQFARSSEQRDALLKQHGLEVE
Ga0208020_10022879	F088530	GAGG	MSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAADLYGLDYKKYYEPEFQDFFDGLELNRCRDRQSNGRLSCGFKMNDALSFVGARCLPLQLALLDKRVDLDEIVANVRHYKWVRKNHTGKKTKKRTNDSYRYVNLKSLTFKNQWSTVK