Scaffold Ga0255204_1022497

Overview

Basic Information

• Taxon OID: 3300027157
• Scaffold ID: Ga0255204_1022497
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1249
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001688	Metagenome / Metatranscriptome	651	Y
F011067	Metagenome / Metatranscriptome	295	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255204_10224974	F001688	AGGAGG	MLKYIWTELRLMVKTVTPAQAIAHELIHAEHDLLRAETGVEYAQSMVTYNKNRVKRLKAYLGKTEEPT
Ga0255204_10224975	F011067	AGGAG	MKTVCDTGRTLCPHKPQCDHLCHFTDATLETRKIAPYLAIPDDIEPVSETWQVIGSVMVGAVLVVLLVICLALFFTGLWIWSLLI