Scaffold Ga0255204_1005950

Overview

Basic Information

• Taxon OID: 3300027157
• Scaffold ID: Ga0255204_1005950
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2758
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002933	Metagenome / Metatranscriptome	519	Y
F046906	Metagenome	150	Y
F053890	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255204_10059502	F046906	GGA	MYDQKTDTQTGQKTSDRNKGKADAVGHTHGKHNPVHLCFGYGNQLYAWPLGQRSGQRRDIQNDFTRFFYSYRRHDWLPEWYQADAK
Ga0255204_10059503	F002933	N/A	MVQPEGYPNRTDALERRAERLQEEYAQALKMRKVKDKIDDLEFELYVKKAERNQLSLEIFTNRKLDIYV
Ga0255204_10059506	F053890	N/A	DEGSETAMGGVFGGILGGSVPIVVKGAGTLIKNVLNSAGIGDQEAAASKMLANYLKKDNLSPTEAQQALDELRRIGVPNPVIADLGKSLNDLAYSAYTVQSNVKGATKEFLENRLIDQPNDMVRGLVEKAGLAKNINGFEYLEALTANQSRLASQAYPEAYSKAINAVPFRKFIDRDVFTKAYGEAVKRADVYGQKLPELSSIRNAQSVPTDVLHQIKMGLDRIVDAETDNITKKISGYGSDVAKVKNEFNDLIKSLNPEYKKANAEFADAERIKNAFKMGEDYQKLNPAEAASKIKKLTSDEKEAFRLGVMADVNQRLGDYKSGDFTKQIFKSENQKLLLRNAFPDQASYTEFSQYVKALNQQATTKQRVLGGSRTDENRAVREESNLLGSLAQASASGDLVSLLRSGVSALTSRAKGLSSESSEALQRKMFSVDPVEQTAILQELNRRARKPQTGLLTGAAAVGSATGIIGD