Scaffold Ga0255083_1010028

Overview

Basic Information

• Taxon OID: 3300027153
• Scaffold ID: Ga0255083_1010028
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → unclassified Candidatus Poseidoniales → Marine Group II euryarchaeote MED-G33 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037631	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255083_10100288	F037631	AGG	MKNKTEFSIFTISFFAVIILYSLLLSGKFNFVPGYFTPNQIVIYDTILTPVAKQGLDTIVDVNGKNALFIGDSHTANHNWGWQVIVCKKTGLRMNNTAVIGKHLPWMVNIAKTSVTSNFDYCFIYGGANDIHGNRNPYQVVKDVQKIVDICNSKGVKPVVLTGLNAEECVRPIKGQEFYPKAYSRYQIILMDSIKNAIVIDTRVVVR