NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255104_1023694

Scaffold Ga0255104_1023694


Overview

Basic Information
Taxon OID3300027146 Open in IMG/M
Scaffold IDGa0255104_1023694 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1122
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070110Metagenome123N
F081344Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0255104_10236941F081344N/ARCIGRKLGDSRMTLDMVNRLFLVVVWTGGILAFFGHMRFYTITGLKVLKAILTILTYATCLTPIYGLFEWIITGDGKVTYWLMQYGVGACIIGLFYYGLCCMMSKADDREKRRAI
Ga0255104_10236943F070110GAGGMFLDDFPIVIWFIRKQKSKYYLYDSIGEFVMMRDEKRKLELYQYCSDNGIE

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