NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255114_1056055

Scaffold Ga0255114_1056055


Overview

Basic Information
Taxon OID3300027145 Open in IMG/M
Scaffold IDGa0255114_1056055 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)695
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F057139Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0255114_10560551F002052AGGAGMPRIYNFKFTVECAGNGTPDMARVEEMIDLTMQDLVFDDEFIAALDEKQSVTIQINLVK
Ga0255114_10560552F057139GAGMDQGRSREEGFDCRMNVVKLTRNYNGYHYFSHRVEFYGGDQVRIKQWIKVRNWLWTQFGPSAEQALARADNFDGIQPVWAWDSEKSAVYLKEEALVMFQLRKEFWENAQNL

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