Scaffold Ga0255102_1017125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255102_1017125

Scaffold Ga0255102_1017125

Overview

Basic Information
Taxon OID	3300027144 Open in IMG/M
Scaffold ID	Ga0255102_1017125 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1308
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104708	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255102_10171252	F104708	AGGA	MVNPTDHLDQALANLWANTRPKGTDILIRNLRAHAYSYAMDNPHLCEDLRQAIGRLEHPSALEPKPLSITDRLDDISQELYDAGHLALAEQINVLFHKVEAALRGTK

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