Scaffold Ga0255102_1014165

Overview

Basic Information

• Taxon OID: 3300027144
• Scaffold ID: Ga0255102_1014165
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1474
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006182	Metagenome	379	Y
F010618	Metagenome	301	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255102_10141652	F006182	GAGG	MKINFNVTGTMEIPDDVIKHYDVAGKLYALEFNDIMYMLQVCIVAEAGAGGWEILHQYEEMENHSITNVRYDDAEFSED
Ga0255102_10141653	F105155	N/A	MYAMMMQNLVKISAAKQLAAEIKYLEWDQVTFNFYHKSYKGYDFYKRNISLNYWQYTVTSDITSCTFKVYEKRAKNAKLGNE
Ga0255102_10141655	F010618	GAGG	MTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEFEQED