NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255105_1045706

Scaffold Ga0255105_1045706


Overview

Basic Information
Taxon OID3300027143 Open in IMG/M
Scaffold IDGa0255105_1045706 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
Ga0255105_10457062F019834GAGGMKELKFTITGTIFVPDNAEYENDFENQIYSFKIGDEAYSLIAGLGTDEKEIIVTDEDFKKHNILPVQYEDAYFEE
Ga0255105_10457063F002406N/AMENLKWIRAMSDRLRDELSSEYDDETKDLIIRAFMEGLHQQPAIVEELKSSSLIESDYFEDAE

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