NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255105_1001145

Scaffold Ga0255105_1001145


Overview

Basic Information
Taxon OID3300027143 Open in IMG/M
Scaffold IDGa0255105_1001145 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6899
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093501Metagenome / Metatranscriptome106N
F097320Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0255105_100114515F097320N/AMTNTDRLAATLRRLSTEARSLSSYQTAFVTQHDVHRVSIDTDRLLSVLSITDASRLDDPNDILELRERLNIVRADLASLLVSVQNLHEKAEEMNTTLNDAETVLDSSDEVL
Ga0255105_100114519F093501N/AMRRVLKAPQTIVLLSGYARSGKDTFAEGMTRHSVDVKRIAYGDALKDAANNYACQLGLSGVNFHEESFKTYHRDTLVAMGRFARSIHKDVFVFNLTEQANRERGHVVVPDCRYLNETIVTKQIMGEVRNWRVIHLHIETEGVGPANEEEAASIREMLE

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