Scaffold Ga0255092_1000404

Overview

Basic Information

• Taxon OID: 3300027137
• Scaffold ID: Ga0255092_1000404
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16727
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034900	Metagenome / Metatranscriptome	173	Y
F043357	Metagenome / Metatranscriptome	156	Y
F048254	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255092_100040422	F043357	GAGG	MSENIFAPFFGAVQDGARERELREYGRDGPHGRWDPGEMPWTIPRRIHPDYRERLSSDPLDWPTVGESGLMGDGRSNDE
Ga0255092_100040423	F048254	GGAGG	MVGDERMAATLKTLAVGESHRLPARYRVEVTVRNMLALTGYRWTVIEIITPQTNTTRFTVTRDA
Ga0255092_100040426	F034900	N/A	RQEAKDVPKKSNRIRRLGERVLVAEGDGMWQAGKIATIIELKNGGVAYVVTLRNGRQVWAPADAVNPDPQRPRGADPTPEQIRQRCLEIQREWPDEVRQQRDMRAQPTAWSVPRSHYLRDTQSGRTDFEH