NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255070_1000664

Scaffold Ga0255070_1000664


Overview

Basic Information
Taxon OID3300027133 Open in IMG/M
Scaffold IDGa0255070_1000664 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7633
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037223Metagenome / Metatranscriptome168N
F041597Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0255070_10006641F037223N/AINILYIYNNMTLFEHILIEGRVDDFKKMLSQRFSIDYVQKIINRDTSKNHKNLLWIGKILKTEPDINDEDLFKNLEIFNKVASSTDLYSFRDYSTFLNFLQKKSKEVQMGKMAQIKAGSHTIKDDKRWLVVAPQTHDASRYFGGGTSWCISTSNDRYWKDYYYAQTIVMIKDRTKKPDNDLFKVAIVGNAYEQLWDTNQDDKLNKIRELVKHVDLYNVNDNKLSGDQKINYLGQLPEDLIEDLMNYFNDDEIYERQNDHYYELARERYDNGGKEELLKSLFNTTVAYFDADVDFHADDFGDLMSRQFADEIQDGNWDEFLSELWGACITDQGVEDDSFYAEVNTRNFKNLISNTNYDLQTYLDLAKEVLKNEDISNMDDIIKDALIKTSDNGDPYTVIKRQANQLKDTNYNDIILSSLNAYNVKNNPTFIQGQRSLGPDFMGIVNKFKPKNIEDVIKVLSINPRAKDMIDQIQRYRRDLYESKKKRSIKYRDFYKL
Ga0255070_100066413F041597N/AVVATDTTGVGTARYSLAAAGYGSDKAIFGYGTTGTVVSITNLVSNTGVVATDTTGVGTARRLLAAAGYGSDKAIFGYGYVAASVSMTNKVSNTGVVATDTIGVGTARQQLAAAGYGSDKAIFGYGYGSGAETSITNLVSNTGVVATDTVGVGTARYSLAAAGYGSDKAIFGYGNSDISGVVSITNLVSNTGVVTNNVSGVGTPRRDLAAAGYGIDKAIFGYGSNSSFAVVSMTNLVSNTGVVATDTTGVGTARQQLAAAGYSLS
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