Scaffold Ga0255110_1023338

Overview

Basic Information

• Taxon OID: 3300027132
• Scaffold ID: Ga0255110_1023338
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F019834	Metagenome	227	N
F027179	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255110_10233381	F002398	AGGA	MIAAISSIFFLLSSLDPIKNFVSLKTYISLNAQKHCQVYFIDENIPDFPRVNLIEKNRDAFFEYLDTIGIEHTQV
Ga0255110_10233383	F027179	N/A	MADGLFLYKTDDSYVVKDQNDNILKQSKTYQTCSRYILKTLQSRRAAEREAIEEIN
Ga0255110_10233384	F019834	GAGG	MKELKFTITGTIAVPDNAEYEYDFENQIYSFKIGDETYSLIAGLGTDEKEIIVTDEDFKKHDIAPVQYEDFYFEDXTYLYGXWIISI
Ga0255110_10233385	F002406	GGA	MSDRLRDELSSEYDDETKDLIIRAFRNGLFQNPDIVEELKSSSLIESDYFEDEE