Scaffold Ga0255110_1023288

Overview

Basic Information

• Taxon OID: 3300027132
• Scaffold ID: Ga0255110_1023288
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1069
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011390	Metagenome	291	Y
F033793	Metagenome / Metatranscriptome	176	N
F039633	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255110_10232881	F033793	N/A	ILGQDPNSTRPIGTEKTLKEAKEYILSRAYNNDYCAIYVADNENPAGELVGRWIIKNKKLTSFEKKPKVIDYKKQIF
Ga0255110_10232882	F039633	N/A	MSEYPGYKNRATFVASVCLSESIQQLRTEHPNMSVLDVKKECLEFLLNNSNHKFVNQFLHVIVDDIDWDFLYNDAMTLTFK
Ga0255110_10232883	F011390	GAG	MKDMEIKTTNYGVCKVKKHKYQTNGNLALSLIDETGQPVVYITTNIFPMGEDEFCANYFNMGATLWNDIVSSGLFVQTGEKVPSGYCEYPVCKLVK