Scaffold Ga0255110_1004270

Overview

Basic Information

• Taxon OID: 3300027132
• Scaffold ID: Ga0255110_1004270
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2988
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F043291	Metagenome	156	N
F044456	Metagenome / Metatranscriptome	154	Y
F083939	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255110_100427010	F043291	N/A	QMKNLAYTTEVHSIDYGYLMVEFDYFEADESVGLSEVYDWFAYTTEDFEDEPAGTEVTYELTAADQALIYSQIKKHHIAMLEDFHA
Ga0255110_10042702	F044456	AGG	MELFFVGLGNEGGSVIETVITIFAIGFVGIALAIGSVCFMVWLALNES
Ga0255110_10042704	F002764	GAGG	LSPEDEAFEELSRRQGDWGLQGSRKHQIIRYAETNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGLKTK
Ga0255110_10042708	F083939	GGAG	MDANYIINSVKQTSETLYREHDADQTERLLYRIQMLEGHIRVLVNHIDNARDEIKNLQTELIAKDSK