NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255110_1000413

Scaffold Ga0255110_1000413


Overview

Basic Information
Taxon OID3300027132 Open in IMG/M
Scaffold IDGa0255110_1000413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepC_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11968
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039135Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0255110_10004135F039135N/AMGKIKTYKQFKESLVIDLSFQGIEDLLESLTVWYDALLSAIGAEEVNIFDTLKLRQDDFSNKLDLDSLGDNVEFINSLSSIALKKSPIQNSDDFQTFLNKPCRFMFLYDINSNELENPIYIMMQVYNDTLSSWDNSKIYKIQDDVKKFYDKLTSRTIEIVDGDQNYIYTTSNGNNEWVLQNKDVENDVYKQTFRKEELEDLVKDRKIKINVI

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