Scaffold Ga0255066_1019883

Overview

Basic Information

• Taxon OID: 3300027131
• Scaffold ID: Ga0255066_1019883
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 977
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255066_10198832	F019834	GAGG	MKELKFTITGTIFVPDNVEYENDFENQIYSFKINDKTYSLIAGLEADDKEIIVTDENFKSHELGIFEYEDAYFED
Ga0255066_10198833	F002406	N/A	MENIKWIRAMSDRLRDELSSEYDDETKDLIIRAFMNGLFQNPAIVEELKSSSLIESDYFEDEE
Ga0255066_10198834	F010618	AGGAG	MTLKELIAKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVQVDYIDEILHPALDTFSGYICRIVLCGEIEGED