Scaffold Ga0255066_1014934

Overview

Basic Information

• Taxon OID: 3300027131
• Scaffold ID: Ga0255066_1014934
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1151
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000868	Metagenome / Metatranscriptome	853	Y
F038241	Metagenome / Metatranscriptome	166	Y
F047059	Metagenome / Metatranscriptome	150	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255066_10149342	F000263	AGG	MNMTAEDIGLPPHLQRMVNAGVSGLDIIHGELKNLMLIAEQELADAIAREEETEEAMDSMVRTECEGHLDALVALYELTYQLSFAIGERDNG
Ga0255066_10149343	F047059	GAGG	LTKSSAFIEYIKLHKLSLIQDMEDANNDIPISEDEYYESDAYYEGAINALEHILSVATDIMNDNERVY
Ga0255066_10149344	F038241	GGAGG	MLGYTKDDIDQMSNAIHDAKLFYILKSDVEQIDKDPLVEGLLKANDFLQGLWAEGYFD
Ga0255066_10149345	F053291	GAG	MITTQELIDYMYDDNLAHFDDRDTSADCDCYIHITLNTMIKYMEAIEC
Ga0255066_10149346	F000868	N/A	MSFLENENQMVIDATYSEIGEMLVEDWVNSNLDEGQLYADYRFAEMSDNNYLKGRFNQFYDLKAGDQYYLECEEE