NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255067_1005725

Scaffold Ga0255067_1005725


Overview

Basic Information
Taxon OID3300027129 Open in IMG/M
Scaffold IDGa0255067_1005725 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2013
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036123Metagenome / Metatranscriptome170Y
F054867Metagenome / Metatranscriptome139Y
F057380Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0255067_10057251F036123N/APRFNLDAQPEDTVLVRMTRENFRYDIIGFTFTKEHPFIAMTEENAQEIFDKEEGFRLATPKEVQEYYN
Ga0255067_10057252F057380N/AMAEIYVNSNSPIRTKIYWEGELASPTGNVTAKVYDITQNPANVISSTNLLLTLTGTAVETDVGTYQVVLPFSYSAYPRKLKLVWEYAVTGSTVGTHTTYVNVVTPYVSINEQIDELNFGSDPSDPNYKTYSDLQMAERYARKLIEEYTQQEFYLYPDTKIIYGDESDTLPLSSKLNRIYQIYSNDILLVDNLSTPKVNNWLYDPIVSETGFGIRVNRVNLLDNSVYVANGLVPPTINDTYNGVFSKNVKYKIVGEFGWDLVPAQVQMATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNSSASKGTGNLYADQLLAPHVISQMVLI
Ga0255067_10057254F054867GGAGLDSSVALLQTASGLERLMAGSVPGVIKDSTVAQVSAFLYYEAAVIAKLTTNAEFKNLFKTTIFNQIEKDFGQYVDAQARVKPKSLHHVYEWNKTGNPTARLFNLYLIDSEGLSFRVGRDFKLSKSTVPS
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