Scaffold Ga0255071_1000596

Overview

Basic Information

• Taxon OID: 3300027127
• Scaffold ID: Ga0255071_1000596
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6947
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008613	Metagenome / Metatranscriptome	330	Y
F017288	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255071_10005961	F008613	N/A	GFDRPPTYTFSSVEDLLKDVDQWRGKEGVVVYSKNDQMLHKVKGAWYLALHHMKSELSNIEKIIDVWLEQGMPDYQTFYNYIFTTFDYELAEQCRGMISRICDAKKEVDMIVSGMNEFVNNRLKTLPTRKLQAEQVISAYGNTNRASFLFKLLDGKSLGKEEYKKLLFQVLKN
Ga0255071_10005962	F017288	N/A	VIVNSGYHNTQTQRKNMADNNKTPYELRWEILKEMINLTRDEWHHKREVAQYNAEKSGKSLEYGGDIPLHDALQRAENVYASFICKK