Scaffold Ga0255116_1029686

Overview

Basic Information

• Taxon OID: 3300027124
• Scaffold ID: Ga0255116_1029686
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 751
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011641	Metagenome	288	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255116_10296861	F011641	AGCAG	MADERLALVDKILAYVSSPFRLFALVLMAVLTFAGYFVYTNQDLLIGAYKESKKIPTIAEDRVEDAAAHLFKQSGALVVAVFKVNSMFGT