Scaffold Ga0255116_1000637

Overview

Basic Information

• Taxon OID: 3300027124
• Scaffold ID: Ga0255116_1000637
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8137
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F006385	Metagenome / Metatranscriptome	374	Y
F007691	Metagenome / Metatranscriptome	346	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255116_10006371	F093851	AGAAGG	MAILGYEVSDVDDMIYALDSVLTTINSDDDPWLYNNTWRAMECLKGLLTEGY
Ga0255116_100063712	F002515	N/A	MTTKKTPEELRRLMELRRSNAATPVKSKKAYSRKGKKCQSDMLQLKNNY
Ga0255116_100063718	F006385	GGAG	LILDNGTLIAIVIALAGSVTVMCLFWKQNIAQQKEIRRLQVALRTERLK
Ga0255116_10006373	F007691	N/A	MNTINDLINEIYESNFSHLEFEENMGGIDCDCHIHITLNTIAKYAGIEVG